pyani package

Module with main code for pyani application/package.

exception pyani.PyaniException

Bases: Exception

General exception for pyani.

Subpackages

• pyani.scripts package
  • Subpackages
    • pyani.scripts.parsers package
      • Submodules
        • pyani.scripts.parsers.anib_parser module
        • pyani.scripts.parsers.aniblastall_parser module
        • pyani.scripts.parsers.anim_parser module
        • pyani.scripts.parsers.classify_parser module
        • pyani.scripts.parsers.common_parser module
        • pyani.scripts.parsers.createdb_parser module
        • pyani.scripts.parsers.download_parser module
        • pyani.scripts.parsers.index_parser module
        • pyani.scripts.parsers.plot_parser module
        • pyani.scripts.parsers.report_parser module
        • pyani.scripts.parsers.run_common_parser module
        • pyani.scripts.parsers.scheduling_parser module
    • pyani.scripts.subcommands package
      • Submodules
        • pyani.scripts.subcommands.subcmd_anib module
        • pyani.scripts.subcommands.subcmd_aniblastall module
        • pyani.scripts.subcommands.subcmd_anim module
        • pyani.scripts.subcommands.subcmd_classify module
        • pyani.scripts.subcommands.subcmd_createdb module
        • pyani.scripts.subcommands.subcmd_download module
        • pyani.scripts.subcommands.subcmd_index module
        • pyani.scripts.subcommands.subcmd_plot module
        • pyani.scripts.subcommands.subcmd_report module
  • Submodules
    • pyani.scripts.average_nucleotide_identity module
      • DEPENDENCIES
        • For graphical output
    • pyani.scripts.delta_filter_wrapper module
    • pyani.scripts.genbank_get_genomes_by_taxon module
    • pyani.scripts.logger module
    • pyani.scripts.pyani_script module
    • pyani.scripts.tools module

Submodules

• pyani.anib module
• pyani.anim module
• pyani.blast module
• pyani.download module
• pyani.nucmer module
• pyani.pyani_classify module
• pyani.pyani_config module
• pyani.pyani_files module
• pyani.pyani_graphics module
• pyani.pyani_jobs module
• pyani.pyani_orm module
• pyani.pyani_report module
• pyani.pyani_tools module
• pyani.run_multiprocessing module
• pyani.run_sge module
• pyani.tetra module