pyani.scripts.parsers.classify_parser module

Provides parser for classify subcommand.

pyani.scripts.parsers.classify_parser.build(subps: argparse._SubParsersAction, parents: Optional[List[argparse.ArgumentParser]] = None) → None

Return a command-line parser for the classify subcommand.

Parameters:

• subps – collection of subparsers in main parser
• parents – parsers from which arguments are inherited

The classify subcommand takes specific arguments:

--cov_min	(minimum coverage threshold for an edge)
--id_min	(minimum identity threshold for an edge)
--resolution	(number of identity thresholds to test)